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Glossary
0-Based Numbering
1-Based Numbering
Absolute error
Adenine
Adenosine triphosphate
Adjacency edges
Adjacency list
Adjacent Nodes
Affine gap penalty
Algo: Abstract data type
Algo: Adjacency list
Algo: Adjacency matrix
Algo: Algorithms by Dasgupta, Papadimitriou, Vazirani. McGraw-Hill. 2006
Algo: Array
Algo: Bellman-Ford algorithm
Algo: Big-O Notation
Algo: Binary heap
Algo: Binary search tree
Algo: Binary tree
Algo: Bipartite graph
Algo: Breadth-first search
Algo: Connected graph
Algo: Cycle
Algo: Degree
Algo: Depth-first search
Algo: Dijkstra's algorithm
Algo: Directed acyclic graph
Algo: Divide-and-conquer
Algo: Edge List Format
Algo: Exponential time
Algo: Fibonacci heap
Algo: Graph
Algo: Hamiltonian path
Algo: Heap
Algo: In-place algorithm
Algo: Inversion
Algo: Linear
Algo: Logarithmic time
Algo: Loop
Algo: Master Theorem
Algo: Matrix
Algo: Polynomial time
Algo: Priority queue
Algo: Queue
Algo: Reverse graph
Algo: Selection algorithm
Algo: Semi-connected graph
Algo: Simple directed acyclic graph
Algo: Simple Directed Graph
Algo: Simple Graph
Algo: Sink vertex
Algo: Sorting algorithm
Algo: Source vertex
Algo: Stack
Algo: Strongly connected component
Algo: Topological sorting
Algo: Tree
Algorithm
Alignment
Alignment score
Alignment-based phylogeny
Allele
Allele frequency
Alphabet
Alternative splicing
Alu repeat
Ambiguity symbol
Amino acid
Angstrom
Anticodon
Archaea
Array
Array notation
ASCII
Augmented string
Autosomal dominant disorder
Autosomal recessive disorder
Autosome
Average mass
Average mass table
B Recognition Element
B-ion
Bacteriophage
Base pair
Basepair edges
Binary fission
Binary tree
Binomial random variable
BioPython
Blending inheritance
BLOSUM62
Bonding Graph
Bowtie
Brute force
C-terminus
Catalan numbers
Cell
Centimorgan
Central dogma of molecular biology
Character
Character table
Characterizable strings
Chargaff's rules
Child
Chimeric protein
Chromatin
Chromosome
Circular string
Clustal
Coding strand
Codon
Combination
Combinatorics
Common logarithm
Common subsequence
Common substring
Common supersequence
Comparative genomics
Complementary base
Complementary DNA
Complementary event
Complete graph
Complete spectrum
Condensation reaction
Conditional probability
Connected graph
Consensus string
Consistent character table
Consistent characters
Consistent matrix
Consistent quartet
Constant gap penalty
Contig
Convergence of characters
CpG island
CpG site
CRISPR
Cut
Cycle
Cystic fibrosis
Cytosine
Dalton
Data structure
de Bruijn graph
Decreasing permutation subsequence
Degree
Dehydration reaction
Deoxyribose
Dependent random variables
Difference multiset
Dimer
Diploid cell
Directed acyclic graph
Directed cycle
Directed Edge
Directed graph
Directed loop
Directed path
Disjoint sets
Distance
Distance matrix
Distance-based phylogeny
Distinct
DNA
DNA codon table
DNA ligase
DNA methylation
DNA polymerase
DNA replication
DNA string
DNAfull
Domain
Dominant allele
Double helix
Dynamic programming
Edge
Edge weight
Edit alignment score
Edit distance
Edit operation
Element
Ellis-van Creveld syndrome
EMBOSS
Empty set
Endosymbiont
Entrez
Enumerate
Enzyme
Epigenetics
Euclidean distance
Eukaryote
Eulerian cycle
European Bioinformatics Institute
European Molecular Biology Laboratory
Exon
Exon skipping
Expected value
Factor
Failure array
FASTA format
FASTA package
FastQC
FASTX
Fibonacci sequence
Fitting alignment
Founder effect
Frameshift mutation
Galaxy
Gamete
Gap
Gap deletion
Gap insertion
Gap penalty
Gap symbol
GC-content
GC-poor
GC-rich
GCG
Gel electrophoresis
GenBank
Gene
Gene coding region
Gene expression
Gene flow
Gene regulation
Gene symbol
Genetic carrier
Genetic code
Genetic code variant
Genetic drift
Genetic equilibrium
Genetic fingerprinting
Genetic linkage
Genetic recombination
Genetic string
Genome
Genome 10K Project
Genome assembly
Genome browser
Genome rearrangement
Genome sequencing
Genomics
Genotype
Genotyping
Genus
GLAM2
Graph
Graph algorithm
Graph theory
Graphviz
Guanine
Hairpin loop
Hamming distance
Haploid cell
Hardy-Weinberg principle
Head
Heredity
Heterozygous
Heuristic
Histone protein
Homodimer
Homologous
Homologous chromosomes
Homozygous
Homozygous dominant
Homozygous recessive
Huntington's disease
Hydration reaction
IDLE
Incident
Increasing permutation subsequence
Indel
Independent events
Independent random variables
Indicator random variable
Intensity
Internal Node
Intersection
Interwoven Strings
Intron
Inversion
Ion
Isotope
IUPAC notation
Junk DNA
k-fold substring
k-mer
k-mer composition
kbp
Knuth-Morris-Pratt algorithm
Leaf
Leslie matrix
Lexicographic order
Linear gap penalty
Linguistic complexity
Local alignment
Local alignment problem
Location
Longest common subsequence
Longest common substring
Loop
Macromolecule
Marker
Markov chain
Mass spectrometry
Mass spectrum
Matching
Matrix
Matrix multiplication
Maximal repeat
Maximum matching
Meiosis
MEME
Memorylessness
Mendel's first law
Mendel's second law
MeSH
Messenger RNA
Microsatellite
Minkowski Difference
Minkowski sum
Mismatch score
Mitochondrion
Mitosis
Modular arithmetic
Monoisotopic mass
Monoisotopic mass table
Monomer
Motif
Motif regular expression
Motzkin numbers
Multiple alignment
Multiple alignment score
Multiplicity
Multiset
Mutation
N statistic
N-glycosylation motif
N-terminus
National Center for Biotechnology Information
Natural selection
Neighbor
Newick format
NEXUS
Node
Noncrossing matching
Nontrivial character
Nontrivial split
Normalized discrepancy
Nucleic Acid
Nucleic acid primary structure
Nucleic acid secondary structure
Nucleic acid tertiary structure
Nucleobase
Nucleosome
Nucleotide
Nucleus
Numerical analysis
Oligonucleotide
Open reading frame
Optimal alignment
Optimize
Organelle
Outcome
Overlap alignment
Overlap graph
p-distance
PAM250
Parent
Parent mass
Parsimony
Partial character
Partial character table
Partial permutation
Partial split
Path
Path length
Pattern
Pattern matching
PDB
Peptide
Peptide bond
Perfect coverage
Perfect matching
Permutation
Permutation subsequence
Pfam
Phenotype
Phosphate
Phosphodiester bond
PHYLIP format
Phylogeny
PIR
Plasmid
Point mutation
Polymer
Polymerase chain reaction
Polymorphic trait
Polypeptide
Polyploid cell
Population bottleneck
Position
Precursor mRNA
Prefix
Prefix spectrum
Primer
Probabilistic event
Probability
Probability tree diagram
Profile matrix
Prokaryote
Promoter
PROSITE
Protein
Protein domain
Protein family
Protein isoform
Protein primary structure
Protein quaternary structure
Protein secondary structure
Protein string
Protein tertiary structure
Proteomics
Pseudoknot
PubMed
Punnett square
Purine
Pyrimidine
Python
Quartet
Quartet distance
Quartet-based phylogeny
Random string
Random variable
Rare-cutter enzyme
Read
Read coverage
Read generation
Reading frame
Recessive allele
Recognition sequence
Recurrence relation
RefSeq
Repeat
Repeated substring
Residue
Restriction digest
Restriction enzyme
Restriction map
Restriction site
Reversal
Reversal distance
Reversal sorting
Reverse complement
Reverse palindrome
Reverse transcription
Reversing substitution
Revert
Ribose
Ribosome
RNA
RNA codon table
RNA folding
RNA interference
RNA Polymerase
RNA splicing
RNA string
RNA transcription
Root
Rooted binary tree
Rooted Newick format
Rooted tree
SAM
ScanProsite
Scoring matrix
Semiglobal alignment
Sequence
Sequence logo
Set
Set complement
Set difference
Set notation
Set theory
Sex chromosome
Sex linkage
Shared peaks count
Shortest common supersequence
Sickle-cell anemia
Side chain
Signed permutation
Silent substitution
Simple cycle
Simplified spectrum
Single gene disorder
Single-nucleotide polymorphism
SMS 2
Somatic cell
Sorting
Sorting reversal
Spacer
Spectral convolution
Spectrum graph
Spliceosome
Split
Split distance
Start codon
Stop codon
Strand
String
String algorithm
String length
String weight
Submatrix
Suboptimal alignment
Subsequence
Subsequence indices
Subset
Substitution model
Substring
Subtree
Suffix
Suffix array
Suffix tree
Sugar
Sugar-phosphate backbone
Supersequence
Superstring
Symbol
Symbol weight
Synteny block
t-prefix
t-suffix
Tail
Tandem mass spectrometry
TATA Box
Taxon
Template strand
Text
Thymine
Trait
Transfer RNA
Transition
Transition matrix
Transition/transversion ratio
Translation
Transposon
Transversion
Tree
Tree of Life
Trie
Trimmomatic
Trivial character
Trivial split
Undirected graph
Uniform random variable
Union
UniProt
Unlabeled tree
Unrooted binary tree
Unrooted Newick format
Uracil
Valid basepair matching
Walk
Weighted alphabet
Weighted graph
Weighted string
Wild type
Wobble base pair
Wright-Fisher model
X Chromosome
X-linked Trait
Y Chromosome
Y-ion
Y-linked trait
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